rs36654403 SNP Detail

Summary

• ID
  rs36654403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:23936826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTAGCAA GTCTTTAGGC
  AAATAAGATT TCCTGTGGCC GTGGGGGATG GGAGGATGAG AGATGAGCTC CTGTCTAGGT
  GATTGACAGG CCCTGCTTGT TAATTCTTAA AGAGAGGACA CAGTTATATG AGATGCTGTG
  GGAAGTTCAG AATGTCAGAT TTCCTCGAAG GGTCAATGGT AGAATTTAGA TTTCGTTCTT
  Y
  AGTTAGCAGG CGAAGTAAAA GACAACATGA GAGAATAAGA TCAGTGGAGG AAGTAGCCTC
  ACAAAAGGCT CTGCCTTTTC ATATGCTAAT TTAAAACATA AATGTCCTCA ATGGCTACCT
  ACCTTATCCA TTTGGCTAAG TAAGGACTCA GAAACAACAC TGAGGAAGAA TCAATCCCAC
  TGGTTGAGAA TAAAATTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51561522	NES14862934	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	C	C	C	C		C	T		T
ss321769518	CHEV_6_23886827	CHEVERUD	SCREENING_POP	f	SNP										T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs36654403					SNP	C	T	T	T	T	C	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51561522	NES14862934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23936826 () rs orientation: forward

Symbol	Name	Function Class
Rr627195	regulatory region 627195	1828 bp proximal