rs36651408 SNP Detail

Summary

• ID
  rs36651408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97873398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGATGAT GTAACCTACG
  TCAGGTGTTT CACTTCCATA GCACAAGGCT GATACTGTTT GATTTCTGGT CGCCAGTGGA
  TTCCACAAAG TGCCCAAGTT TACAAGAGAG GCAGGTCTTT TGTGTGTGTG AGTGACATCA
  CCAAACCAGG CAGTGTGACT TCAGCATCCT GGATTGTAAG GTCCACAGAC AGTCCTGGGA
  Y
  CATATTTGGG CATGCCTTAT AGAACCAAGG ACTAGTAAAT ACAACCGGAA GAACAAAACA
  AAGAACAAAA CACAAGTCAC CATATCCTTT CCAATGATTT TTTTTTTTTT GGTTTTTAAT
  ATCAATTGAT GTTTTAAAAA ATACAGAGGT GTTTGACACA GAATAGCACC ATTGTGTAGG
  ACACGCAGTC CCTGCGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51763569	NES14551325	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36651408					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763569	NES14551325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97873398 () rs orientation: forward

Symbol	Name	Function Class
Col2a1	collagen, type II, alpha 1	85 bp downstream
Rr508999	regulatory region 508999	1724 bp distal
Rr509000	regulatory region 509000	1294 bp proximal
Tssr4707	transcription start site region 4707	1371 bp downstream
Tssr132910	transcription start site region 132910	86 bp upstream
Tssr136189	transcription start site region 136189	151 bp downstream
Tssr136190	transcription start site region 136190	182 bp downstream
Tssr136191	transcription start site region 136191	395 bp downstream
Tssr136192	transcription start site region 136192	501 bp downstream
Tssr136193	transcription start site region 136193	543 bp downstream
Tssr136194	transcription start site region 136194	591 bp downstream
Tssr136195	transcription start site region 136195	607 bp downstream
Tssr136196	transcription start site region 136196	626 bp downstream
Tssr136197	transcription start site region 136197	639 bp downstream
Tssr136198	transcription start site region 136198	1161 bp downstream
Tssr136199	transcription start site region 136199	1207 bp downstream
Tssr136200	transcription start site region 136200	1225 bp downstream
Tssr136201	transcription start site region 136201	1281 bp downstream
Tssr136202	transcription start site region 136202	1335 bp downstream
Tssr136203	transcription start site region 136203	1760 bp downstream
Tssr136204	transcription start site region 136204	1853 bp downstream