rs36649220 SNP Detail

Summary

• ID
  rs36649220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:75465061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGAGGC AAGAGCAGCA
  TCCGGAGCAG TCTCAGCCTG CCCAGCATCC TCTCCAGCAT CCCGAGCGGG GATTGCAGGT
  GTGAAGGAGG TAAGCGTGGG CGCCACTTGC GGGCTACAGC ACAGCAACCT GGGGAGGAAG
  GCATCTGACA ATAGGAACGC CTGGATACTG GAGGAAAGAG TGCTATGTTG ACTTAGGATC
  R
  CGGTGCAAAC CTTTTCAGTA CAATTACGTA CAATTACAGA CTTTGGTAGA GAGAGAGAAA
  AAAAACAAAA AACAAAAGGT AACTCTGCCT GGGATATTAA GGGCGTGGTT AAGGATTTTG
  TTTTGAGTTG CACCATTAAA ACTGGTCTGG GAGATCACAA GATTGAAGAA AGCCCTGCTA
  ATTGAGTACC AGGTGGATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51557828	NES14678959	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36649220					SNP	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51557828	NES14678959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:75465061 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13269	CpG island 13269			within coordinates
Pdcd10	programmed cell death 10			902 bp upstream
Rr578348	regulatory region 578348			954 bp distal
Rr578349	regulatory region 578349			197 bp distal
Rr578350	regulatory region 578350			896 bp distal
Rr578351	regulatory region 578351			within coordinates
Serpini1	serine (or cysteine) peptidase inhibitor, clade I, member 1			Intron
				Noncoding-Transcript-Variant
Tssr29563	transcription start site region 29563			233 bp downstream
Tssr29564	transcription start site region 29564			193 bp downstream
Tssr29565	transcription start site region 29565			167 bp downstream
Tssr29566	transcription start site region 29566			149 bp downstream
Tssr33586	transcription start site region 33586			883 bp upstream
Tssr33587	transcription start site region 33587			835 bp upstream
Tssr33588	transcription start site region 33588			815 bp upstream