rs36648320 SNP Detail

Summary

• ID
  rs36648320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18819469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAAGGA CAAACTCTTC
  TGAGAGCCTC TTAGCATCAC CAGCATAGTT TCAGATAATC AAAACTCTGT CAGTATGCTT
  TAAAATGAAG AAGTGACCTG TGGTGGCTAT TACATTCTAT TACAGTGTCT TATCATTGGT
  GACAGAGACC ATGAAATAGT CCTCTTTGGA ACTTCAGCAT GTGGGAAAAA ATACATACTA
  Y
  GTGCTCAGTG TGTGGCTTTA AAACTCTTCC TGGAGGAATT TCTGAAATTG GCTTTTAACT
  GTGGCCTCTA TTCACATCAC AGCCCTGCCA CCTAGTGGCC AATTACCCAG ATTTAACTAC
  AATACCTCGG ATGAAAGGTG CGAATACTGA CTTGTTTATC AAAGAACTGA AGTGTAAAAG
  TATATTCAGC TTCATTAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51245885	NES13801903	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36648320					SNP	T	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51245885	NES13801903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18819469 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	within coordinates
Rr626952	regulatory region 626952	82 bp proximal