rs36640159 SNP Detail

Summary

• ID
  rs36640159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:45384677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGTTTTC TTTTATATTC
  CTCAAGACAG TCATTTCAAC TCTTTTCCTA CATTTTATAT TGTTCTCCAT TCACTTGAAT
  GGCTGAGATG AGAGACATGT TAATCAATAG TCTCTCTTTC TTGGAATTGA TATAAAAAGA
  TTACATAAAT TGAGGAACGC AATGGTACAA ATTTTCCTGG CACAAATTAA GACTTTCCAA
  Y
  GTCATTTCAA TAAGATAGAA TAAAAATGCA TCACTATCAT TACAACAAAA TTTGAACTCA
  ATGTATGGAT GAAAGACACC TCAAGGAGTA GTGTCTATTT CTTAGAACTA TGGTAAAAAT
  GCTATATAAA TAAAGGCAGC ACAATGGTAC AGGTTTTCCT TCCACATATA AGATTTACAA
  TATAATTCCA AGCAGAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51513094	NES14696197	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36640159					SNP	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51513094	NES14696197	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:45384677 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027H10Rik	RIKEN cDNA 1700027H10 gene			within coordinates
Pcdh10	protocadherin 10			Intron
				Noncoding-Transcript-Variant
Rr576058	regulatory region 576058			1497 bp proximal