rs3663664 SNP Detail

Summary

• ID
  rs3663664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115491993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTA TGCAGACTCT TGAGTTTCTT
  Y
  AACAGGAAGA CAACAATCAC TGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5039599	WI_WGS_2_116591954	WI	MOUSE	f	SNP		C	T
ss45200641	mCV23365479	ABI	CRAMUS_MOUSE	f	SNP	C			C
ss147265770	ENSMUSSNP6740518	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			C
ss320464808	CHEV_2_115487248	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3663664					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115491993 () rs orientation: forward

Symbol	Name	Function Class
Cdin1	CDAN1 interacting nuclease 1	Intron
Rr562938	regulatory region 562938	354 bp distal