rs36635851 SNP Detail

Summary

• ID
  rs36635851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152462196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCTGAGC TCTATCCACA
  GCACAGAAAC AGAGTAGAAC ATCTCGTCAG GACGTCATGC TTATAGCTAT CTTACCTTAC
  TTTTATCCAA GTCACAGCTT AGAGCTTTTA GCTCCTTATT GTACCCTATC ATAAGGTTTT
  ATTTATGCTA GGATTATTAT ATCCTAGCGT AAGGATTTTA ATATAAGCTG CATTTTGGCC
  R
  TATTCTTCAC GTCTGTAGCA GCACCCCCAC ATCTTTCTGC CACGTTTCCT GGCCTTGGCA
  GACTCTTGTC CCTGTGGAAC TCTACGCCCT GTTAAACCCT CCCTTGTGTA AGGTGCCTTG
  GTCATGGTGC TCTAGCATAG CCACTACTAC ATTGTACTTT GTTCAGCTTG ACGAAATGAG
  AACTGGTCTA CCGACTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51672695	NES14643808	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36635851					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51672695	NES14643808	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152462196 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm40181	predicted gene, 40181			896 bp upstream
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587592	regulatory region 587592			1789 bp distal
Rr587593	regulatory region 587593			1995 bp distal
Rr587594	regulatory region 587594			336 bp distal
Rr587595	regulatory region 587595			47 bp proximal
Rr587596	regulatory region 587596			1998 bp proximal