rs36632577 SNP Detail

Summary

• ID
  rs36632577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130897405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGGGTTC GGTTGGTTCT
  GCTGCTGCCC TGAGGCAAGA AGGCTGTGGC TTTGGCTTCA GACCAGGGAT TTGAAGCTTG
  CCCACTGTCG GCAGAGCCCT GGACGCTGCA GAATACAAAG TAAGGCTGAC CATCTTACAC
  ATTACCAACA TTCAAGAGGC CCCTCGGGTA CCGTGTCCAC TAAGGAGACA GATGTACAAT
  Y
  CGATGGAATT CCTCTTCGGC ATCTCACCTC CCTCAGTGTT TCTTTCCTTA AAGAGAGACC
  ATGGGTTTGT TGTTGCCCCT TTCTATATTC TCAGGGTTTC CTTAATGACT GGCTGTTCAA
  ACAAGACAAA GCAAGAGCCA TTGGTGCTTT GCACTCCTCT GGCCAAGATT AAATTTTAAA
  AAGTTTGTGT CTGTAGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51635327	NES14651683	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36632577					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51635327	NES14651683	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130897405 () rs orientation: forward

Symbol	Name	Function Class
Gm36603	predicted gene, 36603	within coordinates
Lef1os1	LEF1 opposite strand RNA 1	within coordinates
Rr375742	regulatory region 375742	523 bp downstream
Rr585264	regulatory region 585264	1929 bp proximal