rs36625398 SNP Detail

Summary

• ID
  rs36625398
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:119688015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGCACTC AGCGTAGCCT
  TCAGGCCCGC ATCCCTAAGA GGGGGCTGGC AGAGCCCCAG AATTCATTTT GCCTGCACTC
  TTATCCCAGA GCAGCGCAAC CAGTCCATGT CGAAACATAT CCCCGACTTT TATTATTTTT
  GGAGCCTGTC CAGGCTCAAC GCACAATCTT TATTTTGTAC TTTACCTCTG CAGCTATTTC
  W
  GTGACAGTGC CTTCAAAGCG AGCAAACACA AGTCAACTTC TAATTTCTGG GTTCGTTATG
  TGCAGGAACT GATCCTATCT TGACATATTA TTCTGATGTT CACCCTCAAG ATTCCTTCCA
  TTAGAAGAAA TGCAATTTAA TATTTCAGAG ACACGGTTCG GAAACACGAA TGTCCTGCTT
  TCAGGGTTCG ATTGGCATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51014966	NES13913088	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36625398					SNP	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51014966	NES13913088	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:119688015 () rs orientation: forward

Symbol	Name	Function Class
Gm66375	predicted gene, 66375	within coordinates
Gm66384	predicted gene, 66384	within coordinates
Rr583949	regulatory region 583949	424 bp distal
Rr583950	regulatory region 583950	41 bp distal