rs36624563 SNP Detail

Summary

• ID
  rs36624563
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8637063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGGTCC TTATAACAAA
  CAGTTCTGGG ATGTGCAGAA TAAATGGTTT CTAAAAGTTT AGTGGCACAG TAGCAAGGGA
  TGTGACGAAT AAATGGTAGT CTGCATTTTC AAGGAACAAT TAGATCCTTG GGGGGGGGGG
  GGGCGCACAT GAGACCATCT TGAGCACAGA GTTATAGTTG CCTCCCTAGC TCCAAATCCG
  W
  GACACACTGT CACAGCGAAC AATCAGAACA ACCAGACTCA GTCATTTGTT TGTTTGTTTG
  TTTGTTTTTG TTTTTCGAGA CAGGGTTTCT CTGTATAGCC CTGGCTGTCC TGGAACTCAC
  TTTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCGCCTG CCTCTGCCTC CCAAGTGCTG
  GGATTAAAGG TGTGCGCCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50810560	NES14204888	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36624563					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810560	NES14204888	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8637063 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	329 bp upstream
Rr427375	regulatory region 427375	within coordinates
Rr427376	regulatory region 427376	735 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	1086 bp downstream
Tssr96639	transcription start site region 96639	673 bp upstream
Tssr96640	transcription start site region 96640	920 bp downstream
Tssr96641	transcription start site region 96641	970 bp downstream
Tssr96642	transcription start site region 96642	989 bp downstream
Tssr96643	transcription start site region 96643	1050 bp downstream
Tssr96644	transcription start site region 96644	1152 bp downstream
Tssr96645	transcription start site region 96645	1280 bp downstream