rs36621753 SNP Detail

Summary

• ID
  rs36621753
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTGTTA CTGTTGGTCA
  CAAATCAATT CTGTGCCTGT TTGATCTCCC AGTAGTTTTC GGCCAGGATT CAGTTACAAC
  TTCCATTCAG CCAGGGAATT GCTAGTCAAT AATATGTATA GAGCAGCCTA GCACGGGTTG
  GAATGGGACA GAGAAACAAG TTCTCATCTT TGGAGCTCAT CCTCTCGGAC ACCTTGCTGT
  K
  CACCCTACCT GCCTTGACGG CATGATGCCA GAGTTGGATG CTTTCCCCAT ACAGCAGCAG
  GACAGCCCTT CCATAGCTAC CATGTCTTTC TTAGCATTAT TGTCAGTGAC ACTTCCTAAG
  AGAAGCCTGG TCATCTTGTC CCCTGTCTTC AAAGTCTCCC TTAGAGAACA GACTCGATTG
  ACACTCTGGT GATGTCTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51814028	NES14768871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T		G		G	G	T	G		T
ss133502640	ENSMUSSNP2225164	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					G
ss321892726	CHEV_6_108402213	CHEVERUD	SCREENING_POP	f	SNP								T					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36621753					SNP	T	T	T	G	T	G	G	T	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814028	NES14768871	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429180 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1607 bp distal
Rr636111	regulatory region 636111	1424 bp proximal