rs3662150 SNP Detail

Summary

• ID
  rs3662150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142018611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAAATA TGTCTTCAAG
  AAAAACAATG AGTTGATATA GCATAGCATG CATTCTAACT GATCTCATCA TGCATAACAC
  TACTGCATAC AAGAAACACA TTTTCATTTA TAAAAATTAA CATTCCAAAA TACTTAAAAA
  CAGAGCAGAA AAAAAAAAAC AACAAAAATA TCCTACAGGC CTTCGTTAAA TGTCAACTGA
  R
  ATATATTTTA AATGAATAAT TTTACTCCAT ATAAACAAAC TACTACTAAC TGAAAGATTT
  TATTTTTAAA ATACCCAAAG CCTCAATTAT AATTCCATCT TTCCAACATA TTTTGTTTCT
  CTCCACAGTG TAATTACTTG AGTCATGAAA TGTACTAAGT TTTAAACTCT TCAATTAAGG
  AAACTCACCT AGCTCAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss5038081	WI_WGS_3_142821317	WI	MOUSE	f	SNP	G				A
ss45402095	mCV24246479	ABI	CRAMUS_MOUSE	f	SNP		G	G		A		A
ss61087796	NES16611445	PERLEGEN	MM_PANEL2	f	SNP			G	G		G		A		G	G		A
ss136012049	ENSMUSSNP1702124	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				A
ss321000251	CHEV_3_141975814	CHEVERUD	SCREENING_POP	f	SNP									A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs3662150					SNP	G	G	G	G	A	G	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087796	NES16611445	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142018611 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr586413	regulatory region 586413	1987 bp distal
Rr586414	regulatory region 586414	1472 bp distal