rs36619640 SNP Detail

Summary

• ID
  rs36619640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65389785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGCTGTA TGGAGATTGG
  GAATTTACGC ACCAACTTAT TCTGACAGTT AGGTACTGTT CATGGGGTAA TTTCATGGTG
  ATGAATGATC CAAAATAAAC TAAAGGGAGA GACACAGAGC TTGCCTGGGT GGCAGAGGCT
  TGGAGACTAT GGCAGGCCAC TTGGTCTGTG CTCACCTGGC TTCTATGTAA AACTGACTGG
  Y
  TGCCAGAGCA TCTGGAAGAG CTTAGAACAG GCATATGAAT AGGGTCAAAT GAGAATGAAG
  CTTGTCTAGC TTCTTCAGGC TGGAAGACCC TGGGATCGGC AGCAGAGCCT CATGGAGGAG
  GATGCCATTG TGGTCCTGGC TCTAGGCCAG TGCCTTCTTC ATTGCCAGAG ATTTGCACCC
  ACCATGCTTG TATCTCATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50966926	NES13932950	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36619640					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50966926	NES13932950	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65389785 () rs orientation: forward

Symbol	Name	Function Class
Rr375119	regulatory region 375119	within coordinates
Rr577683	regulatory region 577683	within coordinates
Rr577684	regulatory region 577684	411 bp proximal
Rr577685	regulatory region 577685	1956 bp proximal