rs36618814 SNP Detail

Summary

• ID
  rs36618814
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15283721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAGAATAT AAACTGCCGG
  GGATTTCTAC TTGGGTATGT GGCTGAGTCA CGCTTGAATG CTTGGGATTT TTTGGTTTTT
  GTTTGTTGGG GATTTTTTGG TTGGTTTGTT TGCTTTGTTT TATTTTTTGG TTTGGGAGAT
  GGGGGTTAGT TTGTTCAGTT GGTTTTGTTC TCCCATGTTT TATGTTTATC ACAGCAATTG
  R
  TACTACTTCA CATAGAATGC TGGACTCGGC AAGTGATTCT TACTTTTCAT AACCACTTGT
  ATTGGATGAT GACCGTCTAA GTATCTAAAT GGATATAGAA TATAAATACC TAAAAAGGCG
  CATTTTAACT GGCTGCCCTG TGAGCTGCCT TTATTACTCC CTTAGCGGGG CAGAAGGTGT
  ATGCATCTAT CTAGTTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51241669	NES13799018	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs36618814					SNP	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51241669	NES13799018	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15283721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Foxp2	forkhead box P2			Intron
				Noncoding-Transcript-Variant
Rr626656	regulatory region 626656			1461 bp proximal