rs36618016 SNP Detail

Summary

• ID
  rs36618016
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:21861920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTCTGTC TGTCTAACTA
  ACTAATTAAC AAACTAACTA ACTAGGGCAG GCTGTCACTG TGTAGCTCTG GCAAACCATG
  GAATTGTGTG TAGACTAAGC ATTCAGGGAC TTCCAAAAAT CCTTAAGCCT CAGCTTCCTA
  AGTGCTGGGA TTACAACCTG AGCCATCACA CTTCATTCCA TCCTTTCATG GTCTAGTCAT
  M
  GAAGTCAGAA ATAACAGCAC TTATACCATA TCAATTGATC AGAGATGTAA CAAGTCTTTC
  TGCCCAGAGC TAAGCTCAAG ACATGTAGAC TTCATTTTAC CAGTAAAGAG AGGGGCATAC
  CTCATGTGTT TACTCATGAC TACATGAGGG GCTAGGCATG GTGATGTGTG CCTGAAATCA
  TAGCACTTGG GAGGTAGAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51435236	NES14440336	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	C	A	A	A	C		A	A	C	A
ss134684615	ENSMUSSNP6502762	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36618016					SNP	A	A	A	A	A	A	A	C	A	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51435236	NES14440336	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:21861920 () rs orientation: forward

Symbol	Name	Function Class
Gm65770	predicted gene, 65770	within coordinates
Rr574150	regulatory region 574150	688 bp distal
Rr574151	regulatory region 574151	1965 bp proximal