rs36614851 SNP Detail

Summary

• ID
  rs36614851
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8948166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGAGAGA ATGGGTTTGG
  GAAAAAAATT TAAACATAAG TAAAAAGATG CAAGGGCACA GAAAAGACTT AGGGGAGAGA
  AGGAGAGAGG GAAGAGCAAG AGAGAAAGAT GAGAGAGGGA GAGATAGAAC ACAGATAGAA
  AATTTTATCC CCCTTTCTTG TTTTGCCCAG CCCTTGGAGA AGAGTCCAGA GTCCAAGGTC
  R
  CACAGTCCTC TCTGCTGCCT CGCTCGCTGA ATGGCTGGCA GTCCGCAGCA TCCCCGCCTC
  TGGCCACCGC AGCCACAGGT TTACAGTTCC CGGCAGCAGC GCCCCTCCCG AAGCCAACTG
  GAGCACCCTA CTCTCTCCAG CACCCACCGT TGCCCTGTGC ACCTCCCTGC CTCACTTCTC
  GCCACTCCCC TGGCGGTCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	WSB/EiJ
ss51545583	NES14860423	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	WSB/EiJ
rs36614851					SNP	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51545583	NES14860423	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8948166 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17155	CpG island 17155	within coordinates
Cpgi17156	CpG island 17156	1494 bp proximal
Nxph1	neurexophilin 1	mRNA-UTR
Rr626455	regulatory region 626455	within coordinates
Rr626456	regulatory region 626456	463 bp proximal
Rr626457	regulatory region 626457	1020 bp proximal
Tssr54925	transcription start site region 54925	261 bp upstream
Tssr54926	transcription start site region 54926	404 bp upstream
Tssr54927	transcription start site region 54927	442 bp upstream
Tssr54928	transcription start site region 54928	749 bp upstream
Tssr54929	transcription start site region 54929	785 bp upstream
Tssr54930	transcription start site region 54930	886 bp upstream
Tssr54931	transcription start site region 54931	1504 bp upstream
Tssr54932	transcription start site region 54932	1646 bp upstream