rs36614493 SNP Detail

Summary

• ID
  rs36614493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83577159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGCTT CCTTCCTTCA
  GCAACCCAGT GCAGAACTTG CCTGACCTGT TGCAAAAGCA TTCTACATGT GTTGTCCGTT
  CTCTACTCTC AGTTCCCTCC GATGCACTTT CTATACAAGA AACCATAAAC ATAATGAATT
  ATTTAAAATC AAAATGGAGT GGCAAGACAG CTCAAATACA GCAAAAGGTT AAATAAAAAG
  Y
  CAACTCCTTG TCATGGCCTG TCACAGTTGG TTCCACTATT CTGGGGCCCT TTAAATCTTC
  AGCCCTGAGG GTTAGAGATG GGGAAGAACA CTACATAGTC ATCAAGAGAA AAATCCACCA
  AGAGGACAGT GCAATCCTTA GTATCTATGC ACCAAACACC GGGGCACTTA AACTCACAAA
  AGAAACAGTG CTGCTACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51353375	NES13744272	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36614493					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51353375	NES13744272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83577159 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17607	CpG island 17607	896 bp distal
Gm7424	predicted gene 7424	630 bp downstream
Rr632898	regulatory region 632898	1774 bp distal
Rr632899	regulatory region 632899	589 bp distal
Rr632900	regulatory region 632900	1315 bp distal
Rr632901	regulatory region 632901	86 bp distal