rs36610435 SNP Detail

Summary

• ID
  rs36610435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66309764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAATCAATA TCAGCCATCA CAATTAGTGG GTAGATGCTG
  ATGCAGAGCC CTTCTCTGGG GAGTGTCCCC CTATCTGCAA AGGGTTAGGA TTTCCATTTC
  Y
  GGATCTCTGC TGCATCTCAG AGAGGGGAAG GGGGGAGGGC ATTGATCTCA CCTCCAAAAT
  GCATTTGACT GAGTTATGTT CCTGGGGAGA AGAAAGTTAA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss50970326	NES13937289	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs36610435					SNP	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50970326	NES13937289	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66309764 () rs orientation: forward

Symbol	Name	Function Class
Gm35236	predicted gene, 35236	within coordinates
Rr2055	regulatory region 2055	within coordinates
Rr577827	regulatory region 577827	1144 bp distal
Rr577828	regulatory region 577828	686 bp distal
Tssr29427	transcription start site region 29427	1182 bp downstream