rs3660861 SNP Detail

Summary

• ID
  rs3660861
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109766021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCTTAAA AACAAAACAA
  AACAAAACAA AGTAATAATT TAAAAAGGAC TTGGGGGACA TGGTGCAGTG GTAAAACAAC
  TTGCTTAGTA TCCGTGACTG AGGCCAGTGT TGGATCTCCT GTACCTGCAG AAAGAAAAGT
  GTTGCATGTA AAACTAGTCA GACCTTGTTA GGCCCCTAGT TTAGTAAATA TATTATACCA
  M
  AGTAAACTTC TTGCTTTAGC TACTATATTA TGTATGTATA AAACTCTCAT TGGCAAGGGC
  AAGGTGAAAA GTTTATAGGT ACCCACTGTC GTGTTTTTTG TAGCTTTTAT TGCACCTTAA
  ATTATTTCAA ACAAGAATGG TAACAAACAT ACCACGTGAG TTTAGGGTCT TGCAAAGTCT
  TAGTCTTGAC GTTATTTAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5036784	WI_WGS_2_110891153	WI	MOUSE	f	SNP	C			A
ss45355520	mCV23137703	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	A	A
ss147206586	ENSMUSSNP1391841	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3660861					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109766021 () rs orientation: forward

Symbol	Name	Function Class
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4	Intron
Rr562518	regulatory region 562518	201 bp proximal