rs36608147 SNP Detail

Summary

• ID
  rs36608147
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:66482106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCTGGT CTTCATAAAA
  GAACCGCTAG AGAAAAATGT GGAAAAAGTT GATTCATCCC ATATTTACAT TCTTTCTGGT
  ACCTGGAAGT GAACCAAAGG CCAAAGTATG CCAAAAAAGA AGTTAGTTAA GTCATTTAGA
  AAACTCATCT TCCCCCAGGC AAAAGGACAA AGTGCCCTGG TAAAGGTCTG CCTTGAGACT
  K
  TAAAGCACCT ACTCCCTAAT GAGACCTGGC TCCCTAACCT CTTCCTCCAG CTTCAGGAAG
  GCAGGCCTTA AGAAATGGCT GATTCTCCTG CATGCCTAGT CTAACCCCTC AAACTTCCCC
  CAGCCTGGCA GTTAGTGTCA TCCAAATCCC CAAATTCCTC TTCTGATATA TGAACAGATC
  AAGGCACTTA GCCCAAATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50968266	NES13941306	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36608147					SNP	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50968266	NES13941306	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:66482106 () rs orientation: forward

Symbol	Name	Function Class
Rr665	regulatory region 665	1010 bp proximal
Rr811	regulatory region 811	within coordinates
Rr577849	regulatory region 577849	1126 bp distal
Rr577850	regulatory region 577850	1972 bp proximal