rs3660786 SNP Detail

Summary

• ID
  rs3660786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137527138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG TCAAAGCTGC TCCAGGAAGT
  R
  CAGATACATG GTAACAATGT GAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5036707	WI_WGS_4_135403936	WI	MOUSE	f	SNP		G	A
ss45693226	mCV22546847	ABI	CRAMUS_MOUSE	f	SNP	G		A	G
ss147620369	ENSMUSSNP1989046	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			G
ss321367570	CHEV_4_137355742	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3660786					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137527138 () rs orientation: forward

Symbol	Name	Function Class
Rr377269	regulatory region 377269	739 bp upstream
Rr602728	regulatory region 602728	407 bp proximal
Rr602729	regulatory region 602729	1227 bp proximal
Rr602730	regulatory region 602730	1823 bp proximal