rs36607610 SNP Detail

Summary

• ID
  rs36607610
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCATTCT GGAACAGCAA
  GCCTGGGGAC TATGTCACAT GATTGTTTAA TCTTGGGGAG TCCCAGGGGA GCACCAGGCA
  CATGCTGTTA CTGAAACAGG ACATAGGCTA AACAAGACAG AGCTGAAAAA TGGAAGAAAG
  AAGTCTCCAT GACGTGTCCC TTCCCGTGGC TCACCTCACT GAGTTAACCC ACCGTGCGGT
  W
  TGCCCTAATC ACAGCGCGCT GCCTCTTCCA CCGTGAGGGC CTTCCTTATC CATCTCTTTA
  GAGGCGGATA CAGATACACA ACACACATAA AACACCTGGC AGCCAGAGCT CACCGTGAGT
  GCCAATCTCT GTCTCCTTAA AATAGCAGAA GGACTTTTGG GAGGAGGTCT AGGGCTTACT
  TAAACGGGGG TAACATTTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50810546	NES14204862	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	T	T	T	T		T	T	T	T		T
ss323245276	CHEV_10_8482877	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36607610					SNP	A	A	A	A	A	T	T	T	T	T	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50810546	NES14204862	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638843 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	60 bp downstream
Rr427375	regulatory region 427375	1629 bp distal
Rr427376	regulatory region 427376	within coordinates
Rr427377	regulatory region 427377	425 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	683 bp upstream
Tssr96640	transcription start site region 96640	820 bp upstream
Tssr96641	transcription start site region 96641	796 bp upstream
Tssr96642	transcription start site region 96642	765 bp upstream
Tssr96643	transcription start site region 96643	709 bp upstream
Tssr96644	transcription start site region 96644	613 bp upstream
Tssr96645	transcription start site region 96645	463 bp upstream