rs3660609 SNP Detail

Summary

• ID
  rs3660609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117939022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGGTTT TAAAAGTACC
  ATTTTCTCGA GGGTTAATAC TTGCCAGAGA GAATATGTTA CAATAATACG AATCTGGGAG
  CCCGAAGTGT TGATGCACTG CCTTGATCGC AGCACTCAGG AGGCAAGGCA GGCAGAGCTC
  TGTGAACTAA GGCCAGCCTG GCTTATCAGT CCAGTTCCAA GCTATCTCTC ACTAAGTAGT
  Y
  AGGGACAATC TTGAACTTCT GTTCTTCCTG CTTCCTTACC ACAGCACCTG GTTTATTTAG
  TGCTGGGGAC TGAACACTGA TTTTCATACG TGCTAGGTGG GCACTCTCGA CCACCTGAGC
  TGCATCTCCA ACCCTGAAAA CTATAACCCC ACATAAAGTA TTTTGTCATA GAAATGCAAA
  TGGATTAGAC ACCATGTCGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5036530	WI_WGS_4_115848313	WI	MOUSE	f	SNP	T			C
ss147299678	ENSMUSSNP5759982	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss321281635	CHEV_4_117754430	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3660609					SNP	T	T	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117939022 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598304	regulatory region 598304			979 bp distal
Rr598305	regulatory region 598305			within coordinates
Rr598306	regulatory region 598306			1457 bp proximal
Rr598307	regulatory region 598307			1966 bp proximal
St3gal3	ST3 beta-galactoside alpha-2,3-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant