rs36605468 SNP Detail

Summary

• ID
  rs36605468
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113697457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACACCGG TCACATAGAG
  ACCTGCTTCT GGGGTGTTCT CGAAAAAGGG CTGCACTGCC ATCCCCAGGA GCAAGTGTCG
  GGAAAGGTGC ACCTGGTGGT TACACCTTAC TGCTTGTCTG TGTCTTGCTT GCGTTTGCTG
  GTTGATTTTG TCTTATACTG TTGGGCATAG TCCCCAGGGC CTTGTTTTTG GTAGGCAGTT
  Y
  TCACTGAGCC ATTCTCCAAG CCCGTTCTGG TGTTTGTTAA CCTGGCAGCT TTGCCTCTCT
  GTTCTCTGGC AGGTATCAAG GCTCTATCTA GCACAAGGAA TGCCCATTGT GGAGATGCAG
  ATGAGATAGA CCTGGTATAG GAGTCCTGCA GTATAGCTTT GACAGGAGAC AGCCCTTTGG
  ATACCTTCAT GTCTTAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51839633	NES14764969	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	C	T		T
ss321911652	CHEV_6_113670490	CHEVERUD	SCREENING_POP	f	SNP										T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36605468					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51839633	NES14764969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113697457 () rs orientation: forward

Symbol	Name	Function Class
Ghrl	ghrelin	616 bp upstream
Gm44033	predicted gene, 44033	1218 bp downstream
Rr636588	regulatory region 636588	612 bp proximal
Tssr62470	transcription start site region 62470	1028 bp upstream
Tssr62471	transcription start site region 62471	613 bp upstream