rs3660481 SNP Detail

Summary

• ID
  rs3660481
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76238256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG CTTGGTGACA CAATGTTAAC
  M
  TTACTAGGTG TCTGCAGTTC TGCAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	PWD/PhJ
ss5036401	WI_WGS_4_73595578	WI	MOUSE	f	SNP	A				C
ss38195078	NES09613623	PERLEGEN	MM_PANEL2	f	SNP				A			C
ss45692238	mCV24047331	ABI	CRAMUS_MOUSE	f	SNP	A	A	A		C	A
ss146585137	ENSMUSSNP4492177	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	PWD/PhJ
rs3660481					SNP	A	A	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38195078	NES09613623	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76238256 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			1814 bp distal
Rr594083	regulatory region 594083			1973 bp distal
Rr594084	regulatory region 594084			within coordinates