rs36601680 SNP Detail

Summary

• ID
  rs36601680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26694259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAGAGT AAATTTATTA
  AAAGGAACAG AAGGGATTGT TTGTGGGCTG TCCTTCTGAA TGGGGAAAGC AGCACCTTAC
  AGTGATTCAA ACCTAGAAGG GAGGCACCAA GGAATCACAA AGCATGAGGC CGGTGACCTT
  GAAACGACCC CCCGGTGGTC TCAACTCACT GCAAGACAAT GTTTTCCTAA TTAAGGTGTA
  R
  TGTTCAATGC CATCTCCAGT TTACATAGAA TTCAATGATA GACCGGTATT TCTTTTCTTA
  TTATTATTCT TTTAGGTGAC ACGTCAGTTC TAAACAGATG ACGAGGCACC CCAACAGTGG
  AATGGCGGGG TAGGAAAAGT GATCAAACAC CATATGCACA AGGGTTTTAA AGCCCTTTGC
  ATCAGGGAGC CCAGAATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442516	NES14434351	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36601680					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442516	NES14434351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26694259 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	664 bp distal
Rr574325	regulatory region 574325	557 bp distal
Rr574326	regulatory region 574326	46 bp proximal
Spata16	spermatogenesis associated 16	Intron