rs36600652 SNP Detail

Summary

• ID
  rs36600652
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26695059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTGTAA ATGAGAATGC
  TGTCATGCAC ACAGACTGTC TCTTTACAGC ATTGTTCCAA CTTCTCTGTA TGACGGGGCT
  GTTGTAAAAC GGCCTGGGAG CGGGACAAAG GCATGGGTCT GCCTCCCCAC CTTTGAGAGC
  TTCTAGGGCT TGGCTGGTTG TATTACTTGG CACAATATAG GTCTGTGTGA AGCTGTGGAC
  S
  TCTCTCCTGT AATGTGTAGG ACTGACAGAT TCTTTTGAAC CACTCATGGT TCACAATTTG
  GGCAGGCTCA GAAGGAACTT GAGCTGACAT GACTCAGGAG AAGTGTTAGA ATGTGTCCCT
  TTCTCCTTAA TTGGGAGATG CTGAAGCTGA AGTCACTACT ACAAGCTAGA ATTGCATGAC
  GAGTGGAAAA TTGATATGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442496	NES14434369	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	G	G	C	C	G	G	G	G	G	G	C
ss134697012	ENSMUSSNP2089484	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36600652					SNP	G	C	C	G	G	C	C	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442496	NES14434369	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26695059 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	1464 bp distal
Rr574325	regulatory region 574325	1357 bp distal
Rr574326	regulatory region 574326	within coordinates
Spata16	spermatogenesis associated 16	Intron