rs36600389 SNP Detail

Summary

• ID
  rs36600389
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152061305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGCCTCA TTGCTGAGGC
  GCTGCCAGCT GAGTGCTTTG TCATCTCTGT TTATCAGTCT TTGAGCTGTG GTTGGTGGCA
  GCACACAGCC ATGACAGGCT TTGAGGATGA GTGATGTTTC CTTCCTCCAG CCTCTGGGTC
  TTGCTTGTTC TTGTCATGTC CCAGCTGTGC ACTCATTGGA GCTGGGAGTG AGTATGTAGT
  W
  ACCGTTCCTG CCACTTTCCA GAGATTGGTT ACTGTCTCGT TCTCTCTTCT GGGAGACCGT
  ACCTTGGGAG CTTTAACCAC CCTGAGCTTC CTGTCTAACT CACCTTTCTG CTCTGAGGCC
  TACAGTCTCT CCAGGCTCAG CTGGGCCAGT CACAGTGCTT TATCCATTTT AATTTTGTTG
  GAGTCACTGT TCTGTTCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51676307	NES14645075	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36600389					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51676307	NES14645075	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152061305 () rs orientation: forward

Symbol	Name	Function Class
Rr587538	regulatory region 587538	within coordinates
Rr587539	regulatory region 587539	1165 bp proximal
Usp33	ubiquitin specific peptidase 33	Intron