rs36599242 SNP Detail

Summary

• ID
  rs36599242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135369065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGAAATC AAAATTTTAA
  CGTGCCTTTC TGGGACCTTC TTAGGCCCCT GTGTGTGTAA CTTATGTAAC AAAGAAATTT
  GAGGAGAATA ATGGCTATGG GGTCCCTAAA GACAAGGGCC TGGTGGATCC CGCAAGCTGT
  GCATCTTCGG AGCCAAGAGA GCTTCAGGCA TGCTGGACCC TTCAGAAAAA TGTGTAGAGT
  R
  AGTGATCTGA ATCTCGCACC CTCTTAGGAA CTTGAGTTCA TTACATCCCA GAGGGTGGGG
  AGATGGCCCA GTTGATAAGG TGCTTGCTGT AGAGCACAAG AACCTGAGTC CAGAGCCCCA
  GTACCCCAGT GAAAAGCTGG GCTGGCGGCA GTTGTCTGCA GTCCCAGCTA CAGGAAGGTG
  GAGACATGAA GATTTGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51649256	NES14653843	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36599242					SNP	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51649256	NES14653843	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135369065 () rs orientation: forward

Symbol	Name	Function Class
Nfkb1	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	Intron
Rr585759	regulatory region 585759	794 bp distal
Tssr35804	transcription start site region 35804	within coordinates
Tssr35805	transcription start site region 35805	1778 bp downstream
Tssr35806	transcription start site region 35806	1789 bp downstream
Tssr35807	transcription start site region 35807	1809 bp downstream
Tssr35808	transcription start site region 35808	1850 bp downstream
Tssr35809	transcription start site region 35809	1887 bp downstream
Tssr35810	transcription start site region 35810	1912 bp downstream
Tssr35811	transcription start site region 35811	1979 bp downstream
Tssr35812	transcription start site region 35812	1998 bp downstream