rs36598132 SNP Detail

Summary

• ID
  rs36598132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34424846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTACAA ACAACCAACT
  GAGAACACCT GTCTTCTGCC ATCCCTTGGG TGTAGCTACT GGTTCACCTG TGTATGGAAA
  CCAAGTTCTT CTTGTCCTTA GCCAATTGAT CTATCTCCTC GTAGTGTCGA GCCTTTGAGA
  GTTTTTTGTT TGGTTGGCTT GGTTTCTGTT TTGGTTGGTG GTCTTTCTGC CTTTTCAAAC
  Y
  TTTGCTGCTT GTGTTTTGGT TTTATTTCTA TGGGGTTTCC CTAGGCAAAC CAGGCTAATC
  TCAAATTCTT GGGTGTCTAT GATCCTCCTG CCTCAACTTC TGGAATGTTA GGACTAAAAG
  TATGCCAAGG TTTCAAGCCC TTGTTTAATT AAACCTTTGT TTAATTATCA TTCCTTTAAA
  CTTTAGGCTC TCTTACAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51273505	NES13780787	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36598132					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51273505	NES13780787	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34424846 () rs orientation: forward

Symbol	Name	Function Class
Rr628311	regulatory region 628311	144 bp proximal
Rr628312	regulatory region 628312	252 bp proximal