rs36597377 SNP Detail

Summary

• ID
  rs36597377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112188401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATATAT ATGTATATAT
  ATATATATGA TATATATGAT ATATATATCA TCTTTTAATA AACCCATCTT GTATACATCA
  CAGGGTCAAT GTGAGCATTT AACAGCTAAG GAATGAAATT AATATGATCC GATATACAGT
  AGGTGCTCGG TGAACATTAC TTTCACTTTC TACTGCAGTA AACCCACATG TGCAGTACTT
  Y
  CCTTCTGCAC ACAAGTATAG AACACCATCT TGCTTACTAT TCATTGCTCT TAACTGCTCT
  TAACCTATTT TTCACAGTGC TTGGAATTGA ATCTGCAGCT TCAAGCTGAG TCATGCTGTC
  TGCCCATGCG CTCTCATTTC AGGTAATACT ACATCTCATG AAGAAAATCA AAGCTACCCT
  GACTTCCCCA GCACAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51832896	NES14763340	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36597377					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51832896	NES14763340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112188401 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	within coordinates
Rr636309	regulatory region 636309	747 bp distal
Rr636310	regulatory region 636310	263 bp distal
Rr636311	regulatory region 636311	265 bp distal