rs3659250 SNP Detail

Summary

• ID
  rs3659250
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:76238058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATC ATAAACAGCC GTAATTACAT
  K
  CCAAGGGGCT ATTAAAAGTA AAACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5035162	WI_WGS_4_73595380	WI	MOUSE	f	SNP	G			T
ss45691887	mCV24047338	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss146585129	ENSMUSSNP3079271	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321170484	CHEV_4_75965725	CHEVERUD	SCREENING_POP	f	SNP						T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3659250					SNP	G	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76238058 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptprd	protein tyrosine phosphatase receptor type D			Intron
				Noncoding-Transcript-Variant
Rr594082	regulatory region 594082			1616 bp distal
Rr594083	regulatory region 594083			1775 bp distal
Rr594084	regulatory region 594084			87 bp proximal