rs3658708 SNP Detail

Summary

• ID
  rs3658708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114226067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTT AATTCCAGCA GGAGTACCCA
  Y
  GGGTCCTTCC CGAAGACAGA TCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss5034619	WI_WGS_4_112152104	WI	MOUSE	f	SNP	C						T
ss37700286	NES09216979	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T		C	C	C		C	T	T		T
ss45698831	mCV22666661	ABI	CRAMUS_MOUSE	f	SNP		C					T	C
ss147267361	ENSMUSSNP3177117	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321273768	CHEV_4_114041475	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3658708					SNP	C	C	T	T	C	T	T	C	C	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37700286	NES09216979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114226067 () rs orientation: forward

Symbol	Name	Function Class
Gm70260	predicted gene, 70260	1670 bp upstream
Rr597554	regulatory region 597554	641 bp distal