rs36587062 SNP Detail

Summary

• ID
  rs36587062
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65535149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCTACA CAGATGTACA
  TAAATACCAT ACATAACTTG TTTTTGTCCA TGGAAAGAGG AGTCTGTAAA TTATGACAAA
  GGGGCCTCGC CATCACCTCC TGGTAGCTGG TGAGTCACTC CACCATTAGC TGTATGACTT
  AGAGGGTGGA TTATTCCAGA GTTTTACACT GGAAGGACAA ACAGGGAGTG TGGCATTTAA
  S
  TTCTTTGCGA TGGTATTCAT TTAAGAGCAC TTTCATCTAA AAATTTGCAT GTTCCTTCCT
  CCTGGAGATT GACAGAAACA GCATTCCCCA ACAGAAAGCA ATCCACAGTA CTTAGAGATA
  CAAGTATTTG TTTTCAAACA ACAGAAAAAT GTATGTGCAC ATTACATAGC GTCTCTTTAA
  GAGTGGCCAG GTATGTTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50965436	NES13945935	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36587062					SNP	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50965436	NES13945935	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65535149 () rs orientation: forward

Symbol	Name	Function Class
Rr577712	regulatory region 577712	1403 bp distal
Rr577713	regulatory region 577713	258 bp distal
Rr577714	regulatory region 577714	1902 bp proximal