rs3658292 SNP Detail

Summary

• ID
  rs3658292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127080020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTCATGCAGG CAATCCGGCT AATTCAGGCC TGTGTGGATG TACTCTCCAG
  Y
  AATGGGTGGC TTAGTCCTGC TCTGGCAGCC ATGGAACTGG CCCAGATGGT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5034202	WI_WGS_2_128218628	WI	MOUSE	f	SNP						T	C
ss37629968	NES09011654	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T		C	T	C	C	C	C	C	T	C
ss45212025	mCV22835849	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss147524154	ENSMUSSNP6854045	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3658292					SNP	C	C	C	C	C	T	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37629968	NES09011654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127080020 () rs orientation: forward

Symbol	Name	Function Class
Rr564475	regulatory region 564475	1977 bp proximal
Snrnp200	small nuclear ribonucleoprotein 200 (U5)	Coding-Synonymous
Tssr19997	transcription start site region 19997	317 bp upstream