rs36582853 SNP Detail

Summary

• ID
  rs36582853
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:78876051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGATATGA ATATTTTCTC
  TGGAGTTGGT GGATTCTGAA ATTTAAAAAA AATAGTCTGA GCTAGTCAAG CTGTCATATA
  TGTTCTGAAT CATAATTGAA TCGGTTTGGG ATATCTTTTT AATTAGCTTA ATGCAGACAG
  GATTATCTTG GTTTGGAAAG CTTTTGGCAG AAGTACTTTT AAACAATTAA CTTAACCAAA
  M
  CATAATGAAA ATGTTAACAG AATATAGCAA AATACTAGCA TACATTTCCT GTACTCCATT
  AAAAAATACA TACAGTGTTT TTCATTCATA TTTTATGACT AAAATTTTAG TGATGGAACT
  CATACGATGA AATAGTGTTG AAAATCACTT ATTGCTCTTG CAGGAAGACT CAGATTTTGT
  TCCCCGGGTA CACAATGTAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51711166	NES14810571	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C		C	A	C	C		A
ss321832862	CHEV_6_78849062	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36582853					SNP	A	A	A	A	A	A	A	A	A	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51711166	NES14810571	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:78876051 () rs orientation: forward

Symbol	Name	Function Class
Rr632520	regulatory region 632520	984 bp proximal
Rr632521	regulatory region 632521	1067 bp proximal