rs36580436 SNP Detail

Summary

• ID
  rs36580436
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:134912926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGCACCA CACATTTTCA
  GCACAGAACA CCATAGAAGA ATCTATTTAT ATGGAAATAA GTGAAACATT ACATACATGC
  ATGTAAATTA CTCCAGATTG TTTTGAAAAC TGCACAGTTG CCTATGGTGG GCAAACTAAT
  AATACCTTTA AGCATCAGAT TTAGGAATAT TTCTCACTTT GACTCTTTTG GTATTTGAAT
  K
  GTATTTATAT ACAAGCATTA ATCTTATGAC AAAGGTTAAT AACAATTACC TTTAAGAAAA
  TAGCATGTAT GCACATTTTA TGGATCTCTC TCCAGAAAGA GTGGATCTGG AGAGGAGAGA
  AGGTATGGAG GAACTGGGAG AAGGAGAGGG AGGGAAACTG TAATTAGGAT ATATGGTATG
  AGAAAAAAGT ATATATATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss51035434	NES13892396	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs36580436					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51035434	NES13892396	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:134912926 () rs orientation: forward

Symbol	Name	Function Class
Gm43033	predicted gene 43033	1822 bp upstream
Rr585670	regulatory region 585670	157 bp distal
Rr585671	regulatory region 585671	303 bp distal