rs36579856 SNP Detail

Summary

• ID
  rs36579856
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116648299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGAGGGG ATCCGGCTGG
  ACACAGGCTG TCTGTCCTTA GTTGTACAGC CACCTAGATA GCCTGCTGCT TAGGCATAAA
  CAGCAGGCAG CCACTTAGCA GCTGCCGCCC TCTCCCGCTG TTCAGTTGTA ATGGCCTCTC
  TTCTCCCCTC CCCTGACATT ACCCACCTCT GGCTCAGCCA CACCCCTCCT GCTCCTGTCC
  W
  AGGCTGCTCA GTCCCACCAG CTGGGAAAGC CCTGAGAGGT TGTGTACCCT GCCAGCTGGA
  GGTGATGGAG ATCCAGGGAG GTCTGACAAA GCACAGCCAT CACAATCTCC ACTCCTACCA
  GGGCGACTCC CCTAGCCAGG CCACCTCTGC CATGTGACCC CTATGGTCCT GGTGACCTTA
  TATGAACCCT CTCTGCCATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51859254	NES14882311	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36579856					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51859254	NES14882311	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116648299 () rs orientation: forward

Symbol	Name	Function Class
Gm67954	predicted gene, 67954	1316 bp upstream
Rassf4	Ras association (RalGDS/AF-6) domain family member 4	Intron
Rr637230	regulatory region 637230	within coordinates
Rr637231	regulatory region 637231	1057 bp distal
Rr637232	regulatory region 637232	78 bp distal
Rr637233	regulatory region 637233	915 bp proximal
Rr637234	regulatory region 637234	1327 bp proximal
Rr637235	regulatory region 637235	1816 bp proximal
Tssr58383	transcription start site region 58383	1940 bp downstream
Tssr58384	transcription start site region 58384	1871 bp downstream
Tssr58385	transcription start site region 58385	207 bp upstream
Tssr58386	transcription start site region 58386	456 bp upstream
Tssr62606	transcription start site region 62606	69 bp downstream
Tssr62607	transcription start site region 62607	1101 bp downstream