rs3657952 SNP Detail

Summary

• ID
  rs3657952
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGTGTG CGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGCG CCCTCCCTCT AAAATGCAAT AATAAAAGGA
  TTATCATAGG CACTGAATCC TCAGCACTTG TGGAATAAGG GTGGGTGAGT CACATGACCT
  CACGTAGCGG GCTGGGTGTC ACTGTTCTTT CTTGACCTTC AGCCCCATAC CTCATCCTTA
  W
  TGAGATTTCA CAGGTCAGTC CCACCGACAG TTTTGGGAAG ACACTATTGG CTGACAGCCT
  GCGTTATGAA AGCATCAGCT CTCCCTGGGC CTGCTGGGTG AGGAGCAGGT AAAAGCCTGG
  TACCTCCATT TTTACTTTAT GGGCCTCAAG CCCTATGACC CGAGTTTGGT CTTTCCAGCT
  CTGGTGGAAG AACTGATTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5033860	WI_WGS_4_127611707	WI	MOUSE	f	SNP	A	T
ss321317070	CHEV_4_129780175	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3657952					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996724 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1223 bp distal
Rr600439	regulatory region 600439	363 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	889 bp proximal
Rr600442	regulatory region 600442	1571 bp proximal
Tssr39229	transcription start site region 39229	1955 bp upstream