rs36577224 SNP Detail

Summary

• ID
  rs36577224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:53056770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAAATG TAGCTAATGC
  TCTTAACCAC TGAGCCATCT CCTCAACACC TAAACCTGAC TTCTGATAAA GCATAGAAAA
  TGTTTTAATA GCAGTGCATG GCAGGAATAG TGCACAGAGC ATGCAAACAT TATTTACTGC
  TTATCTAAGT TAACATTGAC CTCTTAAGTG CAGACATGCT CTTTGAGGAG ACAAGGGGTG
  Y
  TCTTAGAATG ACACCTACGT ACTTGAATTT GGAAAAACAC AACTCAACAA ATGAGGGTTT
  GGCAAATGAC TCTGCTGGTA AAAGCACTTG CCACATAAGC CTGATGATCT GACTTAGAGA
  CCCAAGAACC TGCATTTTAA AAGCCAGATG TAGTGATACA CATCTGTAAT CCCAGCATTC
  CCATGTCCAG ATGGAAGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51219826	NES14311209	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36577224					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51219826	NES14311209	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:53056770 () rs orientation: forward

Symbol	Name	Function Class
Gm30234	predicted gene, 30234	within coordinates
Rr549371	regulatory region 549371	981 bp distal
Rr549372	regulatory region 549372	1565 bp proximal