rs3657696 SNP Detail

Summary

• ID
  rs3657696
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127599592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCTCTTC CCAAACTTGA ACTATTAACA GAACACATCT
  GAGGTAGACA GTCCCGAGGG ATTTTTCTAC AAATCACTCA CTTGTAAGGA ATAGTGAGCT
  S
  ACTTACTTTG CTGGAATAGG AACTCCACTG GCATCGAAAA GCTTAAGAAA CACCCAGCCA
  CAGCTTAACT CTCCTCTCTC ACCAGTTGAC TGAAATAAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5033602	WI_WGS_2_128738601	WI	MOUSE	f	SNP				C	G
ss45222639	mCV22279980	ABI	CRAMUS_MOUSE	f	SNP	G	G	G		G	C
ss147540768	ENSMUSSNP3149708	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3657696					SNP	G	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127599592 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nphp1	nephronophthisis 1 (juvenile) homolog (human)			Intron
				Splice-Site
Rr564596	regulatory region 564596			31 bp distal
Rr564597	regulatory region 564597			1639 bp proximal
Tssr26143	transcription start site region 26143			1954 bp upstream