rs36576687 SNP Detail

Summary

• ID
  rs36576687
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:105347150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCCTAAC ACCACTTATA
  TTCCTAATTA AATTAATTAC CCTCCTAACC CAAGTGCTAC ACAGAGCAAA CAGATGCTGG
  CCACACCGCT CACCTTGGCC CAGCTAACAC ACACAGCTGG TCACATGTGT TCAAATGCTC
  CAACCGCACT TCCTGCAACG TCATCAAGCT TACCTGGGGG CTGGCTGTCA AGCTGGACAG
  M
  GCAGAGCAGT GCTCCACCAC TGAAGAGGAC GTAGCGGGCC AGCACTGACC TAGCCCCCAC
  CCCACCCTCA CCCCAGAGCA CTTACCTGGA GAAGGCCTGC AACCTCACTG ACTGCTAACT
  CACTTGCTCT CTTTGACGTC AGTACAGGGA TCATTGTCTC ATTTTCAACA TTAGGGATCT
  TTTGAAATCG TGCAACCTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50792623	NES14216528	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36576687					SNP	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50792623	NES14216528	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:105347150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp2c1	ATPase, Ca++-sequestering			Intron
				Noncoding-Transcript-Variant
Gm19667	predicted gene, 19667			569 bp upstream
Rr686149	regulatory region 686149			1955 bp distal
Tssr86838	transcription start site region 86838			537 bp upstream
Tssr86839	transcription start site region 86839			563 bp upstream
Tssr86840	transcription start site region 86840			584 bp upstream