rs36576294 SNP Detail

Summary

• ID
  rs36576294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90755566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATGAAT CTGTTTGTTT
  GTTTGTTTTT GAGACAGCGT CTCACCATGT AGCTCTGGCT GACCTGGAAC TATGGAGGCC
  AGGCTACCTC TAACTCACAG AGATATGCCT GCCTCTGCCT CTGTACTGGA ATCAAAGCAG
  GCTTTATGTT ACATATTTTA CCACAAAATA TTTAAAGCAA ATTGCAGAAT ATCCTGTTAT
  R
  TATTTCAAGT TGAAAATGTG GAAACCCATC TTATGTATTA GCAAAGTCAC CAAGCTGTAC
  CTGGAAATAC AGGCTCCTAA CATGAGGTTC CGTTGGGCTC TGGGTCTAGG ATGTAGGCAG
  GATGAGACTT GAGAGGCTGC ACAGGGCCAT CCTATGCCAG AGGACAGAAA GGTCTTTTCC
  TTGTTTTCTC TGTATCTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51360263	NES13739310	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36576294					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51360263	NES13739310	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90755566 () rs orientation: forward

Symbol	Name	Function Class
E130314K07Rik	RIKEN cDNA E130314K07 gene	within coordinates
Iqsec1	IQ motif and Sec7 domain 1	Intron
Rr1762	regulatory region 1762	1911 bp upstream
Rr634323	regulatory region 634323	266 bp proximal