rs3657440 SNP Detail

Summary

• ID
  rs3657440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACTCCCG GAAGACCTCC
  ATGCACTGGA TCAGGTAAGC AGGTGTGCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGCGCCC TCCCTCTAAA ATGCAATAAT AAAAGGATTA TCATAGGCAC TGAATCCTCA
  GCACTTGTGG AATAAGGGTG GGTGAGTCAC ATGACCTCAC GTAGCGGGCT GGGTGTCACT
  R
  TTCTTTCTTG ACCTTCAGCC CCATACCTCA TCCTTATTGA GATTTCACAG GTCAGTCCCA
  CCGACAGTTT TGGGAAGACA CTATTGGCTG ACAGCCTGCG TTATGAAAGC ATCAGCTCTC
  CCTGGGCCTG CTGGGTGAGG AGCAGGTAAA AGCCTGGTAC CTCCATTTTT ACTTTATGGG
  CCTCAAGCCC TATGACCCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5033346	WI_WGS_4_127611670	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3657440					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996687 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1186 bp distal
Rr600439	regulatory region 600439	326 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	926 bp proximal
Rr600442	regulatory region 600442	1608 bp proximal
Tssr39229	transcription start site region 39229	1992 bp upstream