rs3657407 SNP Detail

Summary

• ID
  rs3657407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGAAGG AGAGAACTGA
  CTCCCGGAAG ACCTCCATGC ACTGGATCAG GTAAGCAGGT GTGCGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GCGCCCTCCC TCTAAAATGC AATAATAAAA GGATTATCAT
  AGGCACTGAA TCCTCAGCAC TTGTGGAATA AGGGTGGGTG AGTCACATGA CCTCACGTAG
  Y
  GGGCTGGGTG TCACTGTTCT TTCTTGACCT TCAGCCCCAT ACCTCATCCT TATTGAGATT
  TCACAGGTCA GTCCCACCGA CAGTTTTGGG AAGACACTAT TGGCTGACAG CCTGCGTTAT
  GAAAGCATCA GCTCTCCCTG GGCCTGCTGG GTGAGGAGCA GGTAAAAGCC TGGTACCTCC
  ATTTTTACTT TATGGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
ss5033313	WI_WGS_4_127611654	WI	MOUSE	f	SNP	T	C
ss321317069	CHEV_4_129780122	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	LG/J	SM/J
rs3657407					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996671 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1170 bp distal
Rr600439	regulatory region 600439	310 bp distal
Rr600440	regulatory region 600440	within coordinates
Rr600441	regulatory region 600441	942 bp proximal
Rr600442	regulatory region 600442	1624 bp proximal