rs3657258 SNP Detail

Summary

• ID
  rs3657258
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150114948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TTACCCACCC ACCCTCTGCA
  K
  AGGACCCGGG TAAGTAAGCT GATGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5033162	WI_WGS_4_145423231	WI	MOUSE	f	SNP	G			T
ss45583045	mCV24999719	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T	G
ss148045669	ENSMUSSNP1398614	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321427690	CHEV_4_149404600	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3657258					SNP	G	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150114948 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15342	CpG island 15342	76 bp proximal
Gm70249	predicted gene, 70249	within coordinates
Rr605147	regulatory region 605147	664 bp distal
Rr605148	regulatory region 605148	within coordinates
Tssr40361	transcription start site region 40361	641 bp downstream