rs36571228 SNP Detail

Summary

• ID
  rs36571228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151796181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATAGAGC AATGAGTGCA
  CTATTAAATA CAAAGTCCTA GCATAGTCGT TACTCACTTC AGTTTTCCTC ACCTAAAGAA
  CCAAGTACTT TTGCATCTAA AATCCACCAT CTGATAATCT AAACCTGCTG GTTAGCCTGG
  CCTCGAGGAG GCGGCTCTTT GTTCGGGTAG TGAGAGCTGT TAGCTGAGTC TACAGCCTTG
  Y
  TTTCTGGGCC CTCATTCCCT ACAGCTTTCC TTGGTTGGGT GATGTACACT TCACATTGTT
  CCCGTAAAAC GTTAACAGAG TCGGCTTTGC AGAGAGCTGA GAATTTGACT CCAAATCCTG
  TTCAAGTCCT GAATTTGCCA CTAGCTACAT ATGTGCCCTT GAGCAAGTGA CTTAATTTCC
  CACAACCTAC TTTTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss51060806	NES13430482	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36571228					SNP	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060806	NES13430482	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151796181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13938	CpG island 13938	1959 bp proximal
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	1022 bp distal
Rr587444	regulatory region 587444	1118 bp distal
Rr587445	regulatory region 587445	1935 bp proximal