rs3657048 SNP Detail

Summary

• ID
  rs3657048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150173696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGTGGG GAAGCCCAAG
  GCCCTGCACT ATGCTGGTCC ACTCTTCTTT CACGCTTGTC AGCAAGAAAG CTGTGCCCAG
  AGGCCAGCCT TCCCTCCTGT CGTTTCAGTT TGAAATTCTC GGCAGTCTGC GCAGAATTTG
  AGGCAGGAAG CCTAAGGCTT GTTTCCTGTC TCTTTGCCTC AGCTCAAGGC ACCAGCGTCC
  R
  CCCTAATTAT AGGTCCCTTC TATTAAAAAC TTGAATGCTT TCCAAGGGCC GAGCGGGTAG
  TCAGCACTTT GGTAGAGACA GGTCACCTGG GTGTCACACG CAGAGGCCAC AAGCTGGGAA
  GAGTCACTTG ACCTCCTGTT CTTGTAGCTG TTGGAAGGAG ACCAGCCGGT CCTAAAGAAA
  CGAAAGAGCC CTCCTCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5032951	WI_WGS_4_145482079	WI	MOUSE	f	SNP	A						G
ss46711518	NES11007455	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3657048					SNP	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46711518	NES11007455	PERLEGEN	MM_PANEL	f	SNP	A/G
ss148046970	ENSMUSSNP5877153	ENSEMBL	ENSEMBL_Sanger	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150173696 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	738 bp distal
Gpr157	G protein-coupled receptor 157	Intron
Rr398878	regulatory region 398878	1807 bp downstream
Rr605172	regulatory region 605172	1864 bp distal
Rr605173	regulatory region 605173	1505 bp distal
Rr605174	regulatory region 605174	1169 bp distal
Rr605175	regulatory region 605175	within coordinates
Tssr40369	transcription start site region 40369	1698 bp downstream
Tssr40370	transcription start site region 40370	1570 bp downstream