rs36567822 SNP Detail

Summary

• ID
  rs36567822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:127502394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTTCCGC TGTGGGAGAG GGAGCTCTGT GCATGGACGG
  CCAGAGATCA CCAGTGCCTC CCCTCTCGGT GCCCGGCGCC TGCTGCGCGC TGCTCTTTGC
  Y
  TGGCGCGCGC GGCCCGGGTC CACCGCTGTC CAGGCTCCGT CCCTCCCTCC ACGTCTTCTC
  TCTCGGAGCC TCCGCGCCTC TGTCTGTGCC TCTGCCCCCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50947337	NES14151044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs36567822					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947337	NES14151044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127502394 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700012D01Rik	RIKEN cDNA 1700012D01 gene			598 bp upstream
Gm16229	predicted gene 16229			1041 bp downstream
Nab2	Ngfi-A binding protein 2			Intron
				mRNA-UTR
Rr369095	regulatory region 369095			428 bp upstream
Rr440991	regulatory region 440991			within coordinates
Rr440992	regulatory region 440992			97 bp proximal
Tssr96239	transcription start site region 96239			592 bp upstream
Tssr96240	transcription start site region 96240			630 bp upstream
Tssr96241	transcription start site region 96241			1866 bp upstream
Tssr99813	transcription start site region 99813			73 bp downstream
Tssr99814	transcription start site region 99814			148 bp downstream
Tssr99815	transcription start site region 99815			259 bp downstream
Tssr99816	transcription start site region 99816			369 bp downstream
Tssr99817	transcription start site region 99817			1058 bp downstream
Tssr99818	transcription start site region 99818			1124 bp downstream
Tssr99819	transcription start site region 99819			1996 bp downstream