rs36567653 SNP Detail

Summary

• ID
  rs36567653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113069936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTACATGT TTTCATTATC
  ATACTAGGCA GGTCTCTCAT TTTATAAATA TGCCAGTGTT TACTTCAGAA ATGTAATCAG
  GTTAAAAATT CTTGCTGTGC TGTCCAACTA GAGATCAGTC TCTAGATCTC ACTTAAAGTT
  GGAAGGAGAG CACCAGCTCC CAAAAGATTG TCCCATGGGG CCTAGAGAGA TAGCTCAGCA
  R
  TAAAGAACAC TGTCTCAGTC TTCCAGAGGT TCTGAGTTCA ATTCCCAGCA ACCACATGGT
  GGCACACAAC CATCTGTAAT AGGATCTGAT ACCCTCTTCT GGTCTGTCTG AAGACAGCTA
  TTATTTGTAT ATACATGCTG AAGTATTGCT TATGATAGGC TATCTGTGAT TTGCTTTGGA
  ATGAAAATCA GTTGTAGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51843784	NES14765740	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36567653					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843784	NES14765740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113069936 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr636457	regulatory region 636457			48 bp proximal
Rr636458	regulatory region 636458			86 bp proximal
Setd5	SET domain containing 5			Intron
				Noncoding-Transcript-Variant